LIGGGHTS® - User Forum

LIGGGHTS® related topics can be discussed here: discussion about models, installation, feature requests and general discussion

Remove small numbers from dump file

Submitted by rchurley on Fri, 02/22/2013 - 22:24

I would like to set any small numbers (e.g., below 1e-15) to zero in my dump file. If I do not do this, paraview does not like my vtk files - I get the error: "Error reading ascii data. Possible mismatch of datasize with declaration."

Does anybody know of a simple way to do this using dump_modify or a similar command in the input script?

dump contact force to vtk file

Submitted by shokeyi on Fri, 02/22/2013 - 11:34

Hi,
I am trying to dump the contact force to vtk file in order to see the force chain by Paraview. However, it shows no snapshot. I saw that Mark Bentley had coded it. But when I install the EVTK by "python setup.py install", it shows an error as "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c src/cevtk.c -o build/temp.linux-i686-2.7/src/cevtk.o
src/cevtk.c:4:20: fatal error: Python.h: No such file or directory
compilation terminated.

read_data file error

Submitted by Tamoghna on Fri, 02/22/2013 - 05:51

Hi!

I am running LIGGGHTS 2.2.1. Is it possible to read empty file with read_data I get error like

Reading data file ...
ERROR: Unknown identifier in data file: ȍ°¥Ô* (read_data.cpp:308)

My input file looks like
run 10000 upto every 1000 &
"read_data data/data_* add"

My data file looks like

LIGGGHTS

0 atoms

4 atom types

-0.3220.322 xlo xhi
-0.3220.322 ylo yhi
-0.6470.613 zlo zhi

Signal code: Address not mapped

Submitted by c00l on Thu, 02/21/2013 - 19:49

Hello,
I want to simulate a direct sear box test. I get the code for the test form anther user form the platform. But when I want to run the code I get the following error message:

[zieher@ifas-parallel lammps]$ '/usr/lib64/liggghts_1p5p3/liggghts_1p5p3/src/lmp_fedora' < in.f0.4_90Kpa_0.7
LIGGGHTS 1.5.3 based on lammps-10Mar10
Created orthogonal box = (-0.2 -0.3 -0.1) to (0.2 0.8 0.1)
1 by 1 by 1 processor grid
0 atoms in group nve_group

compute pair/gran/local

Submitted by shokeyi on Thu, 02/21/2013 - 13:04

Hi,
I am trying to compute contact force with paticles through the compute/gran/local command. I have use a loop command and when it loop, it shows an error as "ERROR: Need to define compute pair/gran/local or wall/gran/local before first run (compute_pair_gran_local.cpp:91)". Does anyone know how to modified it? I have attached my input file. Thanks.

shokeyi

Request for "balance.h" and "balance.cpp"

Submitted by dianwa on Mon, 02/18/2013 - 18:19

Hi,

Although our great author told us that the "balance" command would not work with some LIGGGHTS features, I still want to have a try to check whether it works in my case.

While now I can not download previous version and can not find those files. So could anyone send them to me if convenient?

Thank you very much!!

My E-mail is li900@purdue.edu

Best

Liang

incompatible mesh restart

Submitted by mojgan on Sat, 02/16/2013 - 11:40

dear christoph,
thank you for your reply,
I have attached my input files plus their restart files and stls. I will be so gratefull if you take a look.
I want just emphasise that when I unfix mesh walls just before write_restart in in.loading and then fix them again at the beginning of in.shearing the error (below) is solved. but I am not sure what happens if I do so.

ERROR: Incompatible mesh restart file - mesh has different properties in restarted simulation (multi_node_mesh_parallel_buffer_I.h:198)

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