hi,
Recently I got access to HPC which runs on REDHAT
I have an executable file lmp_auto, loaded to my login node using sftp.
From the available modules I loaded openmpi-1.6.4,fftw & hdf5 libraries and submitted the job.
Below is the script file
#! /bin/csh
#PBS -l walltime=01:00:00
#PBS -N hopper
#PBS -q workq
#PBS -l select=4:ncpus=16:mpiprocs=16
#PBS -l place=scatter:excl
#PBS -V
# Go to the directory from which you submitted the job
cd /scratch/shiva/hpc1
module load openmpi-1.6.4
mpirun -np 64 /scratch/shiva/lmp_auto
aaigner | Fri, 11/10/2017 - 21:17
Compile on the hpc...
You have to compile on the hpc and not copy it via SFTP.
You can not guarantee that all dependencies are the same between your machine and the hpc.
Best wishes
Andreas