Hi,
I am working on a shear cell simulation. I run the simulation in different steps (filling, cleaning, shearing...). The problem is that after I finish the shearing operation, I noticed that I have not attained steady state for the shear force. I want to restart (this is the 3rd restart that this model will see). The model will not restart from this point. I have included all the files needed to (try to) run my model. I get the following error:
Setting up run ...
Import and parallelization of mesh base containing 552 triangle(s) successful
Import and parallelization of mesh base_sides containing 384 triangle(s) successful
[Anzac:05857] *** Process received signal ***
[Anzac:05857] Signal: Segmentation fault (11)
[Anzac:05857] Signal code: Address not mapped (1)
[Anzac:05857] Failing at address: 0x331
[Anzac:05857] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) [0x7fb5d3631cb0]
[Anzac:05857] [ 1] liggghts(_ZN9LAMMPS_NS16GeneralContainerIdLi3ELi3EE3delEi+0x1e) [0x5ea2ee]
[Anzac:05857] [ 2] liggghts(_ZN9LAMMPS_NS13MultiNodeMeshILi3EE13deleteElementEi+0x2b) [0x7d42cb]
[Anzac:05857] [ 3] liggghts(_ZN9LAMMPS_NS21MultiNodeMeshParallelILi3EE13deleteElementEi+0x31) [0x7d4591]
[Anzac:05857] [ 4] liggghts(_ZN9LAMMPS_NS12TrackingMeshILi3EE13deleteElementEi+0x15) [0x7d4605]
[Anzac:05857] [ 5] liggghts(_ZN9LAMMPS_NS21MultiNodeMeshParallelILi3EE13deleteUnownedEv+0x10f) [0x7df5ef]
[Anzac:05857] [ 6] liggghts(_ZN9LAMMPS_NS21MultiNodeMeshParallelILi3EE11initalSetupEv+0x6d) [0x7e4bed]
[Anzac:05857] [ 7] liggghts(_ZN9LAMMPS_NS7FixMesh12initialSetupEv+0x14) [0x5e62e4]
[Anzac:05857] [ 8] liggghts(_ZN9LAMMPS_NS7FixMesh15setup_pre_forceEi+0x45) [0x5e63c5]
[Anzac:05857] [ 9] liggghts(_ZN9LAMMPS_NS14FixMeshSurface15setup_pre_forceEi+0x9) [0x5e74c9]
[Anzac:05857] [10] liggghts(_ZN9LAMMPS_NS25FixMeshSurfaceStressServo15setup_pre_forceEi+0x9) [0x5f3af9]
[Anzac:05857] [11] liggghts(_ZN9LAMMPS_NS6Modify15setup_pre_forceEi+0xc7) [0x6f2547]
[Anzac:05857] [12] liggghts(_ZN9LAMMPS_NS6Verlet5setupEv+0x155) [0x8063e5]
[Anzac:05857] [13] liggghts(_ZN9LAMMPS_NS3Run7commandEiPPc+0x254) [0x7bc034]
[Anzac:05857] [14] liggghts(_ZN9LAMMPS_NS5Input15execute_commandEv+0x9cb) [0x6bb2fb]
[Anzac:05857] [15] liggghts(_ZN9LAMMPS_NS5Input4fileEv+0x528) [0x6bd058]
[Anzac:05857] [16] liggghts(main+0x49) [0x48b379]
[Anzac:05857] [17] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7fb5d328476d]
[Anzac:05857] [18] liggghts() [0x48c6c1]
[Anzac:05857] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 5857 on node Anzac exited on signal 11 (Segmentation fault).
Thank you for any help,
Kirk
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ckloss | Fri, 08/30/2013 - 15:29
Hi Kirk,
Hi Kirk,
there is a pending bugfix for restarting with meshes, it will be in the next release (~2 weeks)
Cheers
Christoph