Installation of CFDEM on Mac OS X ... twoWayMPI problem!!

Submitted by mikahs on Wed, 10/05/2011 - 19:02

Hi guys, I'm running onto a problem while trying to compile CFDEM...

First of all, yes, I compiled OF 2.0.1 from scratch... re-compiled it again, compiled liggghts, the libraries, checked that I am using the same compilers, edited the .bashrc at /etc , and I am having this error on twoWayMPI.C... By the way, on Mac OS x S.L. 10.6.8...

I guess that I am having some sort of problem with the including of liggghts libraries, so I am trying re-make-ing liggghts with different options.

It is worth noting that everything else done before this message was done without error or warning. I am using a slightly modified myFedora11/fedora make of liggghts. Any suggestions, clues?

Cheers!

M.

What the error looks like:

SOURCE=subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C ; g++-mp-4.5 -m64 -fsignaling-nans -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2 -DNoRepository -ftemplate-depth-100 -I ./cfdemParticle -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/finiteVolume/lnInclude -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/transportModels -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/turbulenceModels/incompressible/turbulenceModel -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/meshTools/lnInclude -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/lagrangian/basic/lnInclude -I-Wl,-u,_munmap -Wl,-multiply_defined,suppress -lmpi -lopen-rte -lopen-pal/include/ -I/Users/mikahs/LIGGGHTS/LIGGGHTS/src -IlnInclude -I. -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/OpenFOAM/lnInclude -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc45DPOpt/twoWayMPI.o
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C: In member function 'virtual void Foam::twoWayMPI::getVectorData(Foam::word, double** const&) const':
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C:140:58: warning: use of old-style cast
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C:140:63: warning: deprecated conversion from string constant to 'char*'
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C: In member function 'virtual void Foam::twoWayMPI::getScalarData(Foam::word, double** const&) const':
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C:150:58: warning: use of old-style cast
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C:150:63: warning: deprecated conversion from string constant to 'char*'
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C: In member function 'virtual void Foam::twoWayMPI::giveVectorData(Foam::word, double** const&) const':
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C:160:57: warning: use of old-style cast
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C:160:62: warning: deprecated conversion from string constant to 'char*'
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C: In member function 'virtual void Foam::twoWayMPI::giveScalarData(Foam::word, double** const&) const':
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C:170:57: warning: use of old-style cast
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C:170:62: warning: deprecated conversion from string constant to 'char*'
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C: In member function 'virtual bool Foam::twoWayMPI::couple() const':
subModels/dataExchangeModel/twoWayMPI/twoWayMPI.C:220:50: error: 'liggghts_get_maxtag' was not declared in this scope
make: *** [Make/darwinIntel64Gcc45DPOpt/twoWayMPI.o] Error 1

Forums:

ckloss's picture

ckloss | Wed, 10/05/2011 - 19:05

looks like you are using an older version of LIGGGHTS - be sure you are using the latest version from the -dev branch!

Cheers, Christoph

mikahs | Wed, 10/05/2011 - 21:00

Hello Christoph, thanks for your answer. I did what you suggested, and somehow I got another error now (after the twoWayMPI thingy, which now works with some warnings, but ok)...

here is the last part of the log:


SOURCE=subModels/liggghtsCommandModel/readLiggghtsData/readLiggghtsData.C ; g++-mp-4.5 -m64 -fsignaling-nans -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2 -DNoRepository -ftemplate-depth-100 -I ./cfdemParticle -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/finiteVolume/lnInclude -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/transportModels -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/turbulenceModels/incompressible/turbulenceModel -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/meshTools/lnInclude -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/lagrangian/basic/lnInclude -I-Wl,-u,_munmap -Wl,-multiply_defined,suppress -lmpi -lopen-rte -lopen-pal/include/ -I/Users/mikahs/LIGGGHTS/LIGGGHTS/src -IlnInclude -I. -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/OpenFOAM/lnInclude -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc45DPOpt/readLiggghtsData.o
ld: library not found for -lopen-pal/include/
collect2: ld returned 1 exit status
make: *** [/Users/mikahs/OpenFOAM/mikahs-2.0.x/platforms/darwinIntel64Gcc45DPOpt/lib/liblagrangianCFDEM_shared.dylib] Error 1

What about this library!? I would really appreciate some help here...
edit: mmm openmpi library... ok, I am still lost here as I do have -lopen-pal, but that /include/ makes me wonder...

Miguel

mikahs | Wed, 10/05/2011 - 21:32

The problem was on the Options File..

just pasted this:
-I$(MPI_ARCH_PATH) \

without the fishy /include/ thingy...

Thanks for the help though!!

M.

mikahs | Wed, 10/05/2011 - 21:44

Hello, I've got another problem now...

Now I'm not sure what is going on... What does that mean? has anybody experienced something similar?

Cheers,

Miguel

Log of the error:

SOURCE=cfdemSolverPiso.C ; g++-mp-4.5 -m64 -fsignaling-nans -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2 -DNoRepository -ftemplate-depth-100 -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/turbulenceModels/incompressible/turbulenceModel -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/transportModels -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/transportModels/incompressible/singlePhaseTransportModel -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/finiteVolume/lnInclude -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/lagrangian/cfdemParticle//lnInclude -IlnInclude -I. -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/OpenFOAM/lnInclude -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc45DPOpt/cfdemSolverPiso.o
/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/finiteVolume/lnInclude/readPISOControls.H: In function 'int main(int, char**)':
/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/finiteVolume/lnInclude/readPISOControls.H:3:15: warning: unused variable 'nOuterCorr'
/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/finiteVolume/lnInclude/readPISOControls.H:15:16: warning: unused variable 'transonic'
g++-mp-4.5 -m64 -fsignaling-nans -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2 -DNoRepository -ftemplate-depth-100 -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/turbulenceModels/incompressible/turbulenceModel -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/transportModels -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/transportModels/incompressible/singlePhaseTransportModel -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/finiteVolume/lnInclude -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/lagrangian/cfdemParticle//lnInclude -IlnInclude -I. -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/OpenFOAM/lnInclude -I/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -lpthread -L/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/platforms/darwinIntel64Gcc45DPOpt/lib/openmpi-system -lPstream Make/darwinIntel64Gcc45DPOpt/cfdemSolverPiso.o -L/Volumes/Mac-OF-2.0.x/OpenFOAM-2.0.x/platforms/darwinIntel64Gcc45DPOpt/lib \
-L/Users/mikahs/OpenFOAM/mikahs-2.0.x/platforms/darwinIntel64Gcc45DPOpt/lib -lincompressibleRASModels -lincompressibleLESModels -lincompressibleTransportModels -lfiniteVolume -llagrangianCFDEM_shared -lOpenFOAM -ldl -lpthread -lm -o /Users/mikahs/OpenFOAM/mikahs-2.0.x/platforms/darwinIntel64Gcc45DPOpt/bin/cfdemSolverPiso_shared
Undefined symbols:
"Foam::incompressible::turbulenceModel::New(Foam::GeometricField, Foam::fvPatchField, Foam::volMesh> const&, Foam::GeometricField const&, Foam::transportModel&, Foam::word const&)", referenced from:
_main in cfdemSolverPiso.o
"Foam::incompressible::turbulenceModel::typeName", referenced from:
_main in cfdemSolverPiso.o
ld: symbol(s) not found
collect2: ld returned 1 exit status
make: *** [/Users/mikahs/OpenFOAM/mikahs-2.0.x/platforms/darwinIntel64Gcc45DPOpt/bin/cfdemSolverPiso_shared] Error 1