Errors when run all tutorials

Submitted by zhangqi on Fri, 06/25/2021 - 04:05

Dear all,

When I get started to run those examples in tutorals, I always get following errors:

CFDEMcoupling version: cfdem-3.8.1
, compatible to LIGGGHTS version: 3.8.0
, compatible to OF version and build: 5.x-commit-538044ac05c4672b37c7df607dca1116fa88df88

You are currently using:
OF version: 5.0
OF build: 5.0
CFDEM build:

[1] #0 Foam::error::printStack(Foam::Ostream&) at ??:?
[3] #0 Foam::error::printStack(Foam::Ostream&) at ??:?
[2] #0 Foam::error::printStack(Foam::Ostream&) at ??:?
[0] #0 Foam::error::printStack(Foam::Ostream&) at ??:?
[3] #1 Foam::sigFpe::sigHandler(int) at ??:?
[1] #1 Foam::sigFpe::sigHandler(int) at ??:?
[0] #1 Foam::sigFpe::sigHandler(int) at ??:?
[2] #1 Foam::sigFpe::sigHandler(int) at ??:?
[3] #2 ? in "/lib64/libc.so.6"
[1] #2 ? in "/lib64/libc.so.6"
[0] #2 ? in "/lib64/libc.so.6"
[2] #2 ? in "/lib64/libc.so.6"
[3] #3 Foam::twoWayMPI::setCG() const at ??:?
[1] #3 Foam::twoWayMPI::setCG() const at ??:?
[0] #3 Foam::twoWayMPI::setCG() const at ??:?
[2] #3 Foam::twoWayMPI::setCG() const at ??:?
[3] #4 Foam::cfdemCloud::cfdemCloud(Foam::fvMesh const&) at ??:?
[1] #4 Foam::cfdemCloud::cfdemCloud(Foam::fvMesh const&) at ??:?
[0] #4 Foam::cfdemCloud::cfdemCloud(Foam::fvMesh const&) at ??:?
[3] #5 ? at ??:?
[2] #4 Foam::cfdemCloud::cfdemCloud(Foam::fvMesh const&) at ??:?
[1] #5 ? at ??:?
[0] #5 ? at ??:?
[3] #6 __libc_start_main in "/lib64/libc.so.6"
[2] #5 ? at ??:?
[1] #6 __libc_start_main in "/lib64/libc.so.6"
[0] #6 __libc_start_main in "/lib64/libc.so.6"
[3] #7 ? at ??:?
[2] #6 __libc_start_main in "/lib64/libc.so.6"
[1] #7 ? at ??:?
[0] #7 ? at ??:?
[2] #7 ? at ??:?
srun: error: gb0807: tasks 0-3: Floating point exception

******************************************************************
I am very confused about this. The system seeting are following:

*********************************
CFDEM(R)coupling system settings:
*********************************
CFDEM_VERSION=PUBLIC
couple to OF_VERSION=5.0
compile option=Opt

check if paths are set correctly
valid:yes critical:yes - $CFDEM_PROJECT_DIR = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0
valid:yes critical:no - $CFDEM_PROJECT_USER_DIR = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/scb0030-PUBLIC-5.0
valid:yes critical:yes - $CFDEM_SRC_DIR = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/src
valid:yes critical:yes - $CFDEM_SOLVER_DIR = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/applications/solvers
valid:yes critical:yes - $CFDEM_TUT_DIR = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/tutorials
valid:yes critical:yes - $CFDEM_LIGGGHTS_SRC_DIR = /public1/home/scb0030/cfdem_xia/openfoam/LIGGGHTS/LIGGGHTS-PUBLIC/src
valid:yes critical:yes - $CFDEM_LIGGGHTS_LIB_PATH = /public1/home/scb0030/cfdem_xia/openfoam/LIGGGHTS/LIGGGHTS-PUBLIC/src
valid:yes critical:yes - $CFDEM_LPP_DIR = /public1/home/scb0030/cfdem_xia/openfoam/LIGGGHTS/lpp/src
valid:yes critical:yes - $CFDEM_ADD_LIBS_DIR = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/src/lagrangian/cfdemParticle/etc/addLibs_universal
valid:yes critical:yes - $CFDEM_LIB_DIR = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/platforms/linux64IccDPInt32Opt/lib
valid:yes critical:yes - $CFDEM_APP_DIR = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/platforms/linux64IccDPInt32Opt/bin
valid:NO critical:no - $CFDEM_USER_LIB_DIR = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/scb0030-PUBLIC-5.0/platforms/linux64IccDPInt32Opt/lib does not exist
valid:NO critical:no - $CFDEM_USER_APP_DIR = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/scb0030-PUBLIC-5.0/platforms/linux64IccDPInt32Opt/bin does not exist
valid:yes critical:no - $CFDEM_TEST_HARNESS_PATH = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/scb0030-PUBLIC-5.0/log/logFilesCFDEM-PUBLIC-5.0
valid:NO critical:no - $C3PO_SRC_DIR = does not exist

library names
$CFDEM_LIGGGHTS_LIB_NAME = lmp_mpi
$CFDEM_LIB_NAME = lagrangianCFDEM-PUBLIC-5.0
$LD_LIBRARY_PATH = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/platforms/lib:/public1/home/scb0030/cfdem_xia/openfoam/CFDEM/scb0030-PUBLIC-5.0/platforms/linux64IccDPInt32Opt/lib:/public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/platforms/linux64IccDPInt32Opt/lib:/public1/soft/vtk/8.2.0-new/lib:/public1/home/scb0030/cfdem_xia/openfoam/ThirdParty-5.0/platforms/linux64Icc/gperftools-svn/lib:/public1/home/scb0030/cfdem_xia/openfoam/OpenFOAM-5.0/platforms/linux64IccDPInt32Opt/lib/mpi:/public1/home/scb0030/cfdem_xia/openfoam/ThirdParty-5.0/platforms/linux64IccDPInt32/lib/mpi:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/mpi/lib64:/public1/home/scb0030/OpenFOAM/scb0030-5.0/platforms/linux64IccDPInt32Opt/lib:/public1/home/scb0030/cfdem_xia/openfoam/site/5.0/platforms/linux64IccDPInt32Opt/lib:/public1/home/scb0030/cfdem_xia/openfoam/OpenFOAM-5.0/platforms/linux64IccDPInt32Opt/lib:/public1/home/scb0030/cfdem_xia/openfoam/ThirdParty-5.0/platforms/linux64IccDPInt32/lib:/public1/home/scb0030/cfdem_xia/openfoam/OpenFOAM-5.0/platforms/linux64IccDPInt32Opt/lib/dummy:/public1/soft/vtk/8.2.0-new/lib64:/public1/soft/intel/2017/debugger_2017/libipt/intel64/lib:/public1/soft/intel/2017/debugger_2017/iga/lib:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/daal/../tbb/lib/intel64_lin/gcc4.4:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/daal/lib/intel64_lin:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/tbb/lib/intel64/gcc4.7:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/mkl/lib/intel64_lin:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/ipp/lib/intel64:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/mpi/mic/lib:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/mpi/intel64/lib:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/compiler/lib/intel64_lin:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/compiler/lib/intel64
$WM_NCOMPPROCS =
$WM_LABEL_SIZE = 32

Additional lib settings
CFDEM_ADD_LIBS_DIR/CFDEM_ADD_LIBS_NAME = /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_5.0
CFDEM_ADD_LIB_PATHS =
CFDEM_ADD_LIBS =

LIGGGHTS library link (created during compilation of CFDEM)
lrwxrwxrwx 1 scb0030 scb0030 80 Jun 24 12:23 /public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/platforms/linux64IccDPInt32Opt/lib/liblmp_.so -> /public1/home/scb0030/cfdem_xia/openfoam/LIGGGHTS/LIGGGHTS-PUBLIC/src/liblmp_.so
*******************
g++:
/usr/bin/g++
g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-44)
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

gcc:
/usr/bin/gcc
gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-44)
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

mpic++:
which: no mpic++ in (/public1/home/scb0030/bin:/public1/home/scb0030/cfdem_xia/openfoam/CFDEM/scb0030-PUBLIC-5.0/platforms/linux64IccDPInt32Opt/bin:/public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/platforms/linux64IccDPInt32Opt/bin:/public1/soft/vtk/8.2.0-new/bin:/public1/home/scb0030/cfdem_xia/openfoam/ThirdParty-5.0/platforms/linux64Icc/gperftools-svn/bin:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/mpi/bin64:/public1/home/scb0030/OpenFOAM/scb0030-5.0/platforms/linux64IccDPInt32Opt/bin:/public1/home/scb0030/cfdem_xia/openfoam/site/5.0/platforms/linux64IccDPInt32Opt/bin:/public1/home/scb0030/cfdem_xia/openfoam/OpenFOAM-5.0/platforms/linux64IccDPInt32Opt/bin:/public1/home/scb0030/cfdem_xia/openfoam/OpenFOAM-5.0/bin:/public1/home/scb0030/cfdem_xia/openfoam/OpenFOAM-5.0/wmake:/public1/soft/cmake/3.9.0/bin:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/debugger/gdb/intel64_mic/bin:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/mpi/intel64/bin:/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/bin/intel64:/public1/soft/modules/4.1.2/bin:/public1/clurm/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/public1/home/scb0030/.local/bin:/public1/home/scb0030/bin)
/public1/home/scb0030/cfdem_xia/openfoam/CFDEM/CFDEMcoupling-PUBLIC-5.0/src/lagrangian/cfdemParticle/etc/cfdemSystemTest.sh: line 91: mpic++: command not found
mpirun:
/public1/soft/intel/2017/compilers_and_libraries_2017.7.259/linux/mpi/bin64/mpirun
Intel(R) MPI Library for Linux* OS, Version 2017 Update 4 Build 20170817 (id: 17752)
Copyright (C) 2003-2017, Intel Corporation. All rights reserved.
**********************
additional packages...

*********************************************
Any advice will be very helpful for a beginner. Thanks in advance.

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