Installment error using cfdemCompCFDEM commond

Submitted by strathclyde on Mon, 04/10/2017 - 08:50

Hi,

I have encountered one problem as follows: I use the Ubuntu 16.04 and OpenFoam of 3.0.0 version. Could anyone help me? I appreciate your help and time.

cfdemCompCFDEM

Please provide the libraries to be compiled in the /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/library-list.txt file.
will change path and create lnInclude...
wmakeLnInclude: linking include files to ./lnInclude
will change path and create lnInclude...
wmakeLnInclude: linking include files to ./lnInclude
will change path and create lnInclude...
wmakeLnInclude: linking include files to ./lnInclude

\n Creation of lnInclude directories finished!

will change path...
rm: cannot remove '/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/log/log_compileCFDEMcoupling_cfdemParticle': No such file or directory

// log_compileCFDEMcoupling_cfdemParticle-2017-04-10-14:33 //

/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle

Compiling a incompressible library.
removing all .dep files ...
rm: cannot remove '/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/Make/cfdemParticle': No such file or directory
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
wmake error: file 'Make/linux64GccDPInt32Opt/sourceFiles' could not be created in /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle
will change path...
rm: cannot remove '/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/log/log_compileCFDEMcoupling_scalarTransportModelsCFDEM': No such file or directory

// log_compileCFDEMcoupling_scalarTransportModelsCFDEM-2017-04-10-14:33 //

/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/eulerian/scalarTransportModelsCFDEM

Compiling a incompressible library.
removing all .dep files ...
rm: cannot remove '/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/eulerian/scalarTransportModelsCFDEM/Make/cfdemParticle': No such file or directory
Make/options:23:12: warning: backslash-newline at end of file
LIB_LIBS = \
^
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
wmake error: file 'Make/linux64GccDPInt32Opt/sourceFiles' could not be created in /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/eulerian/scalarTransportModelsCFDEM
will change path...
rm: cannot remove '/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/log/log_compileCFDEMcoupling_fvOptionsCFDEM': No such file or directory

// log_compileCFDEMcoupling_fvOptionsCFDEM-2017-04-10-14:33 //

/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/eulerian/fvOptionsCFDEM

Compiling a incompressible library.
removing all .dep files ...
rm: cannot remove '/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/eulerian/fvOptionsCFDEM/Make/cfdemParticle': No such file or directory
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
wmake error: file 'Make/linux64GccDPInt32Opt/sourceFiles' could not be created in /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/eulerian/fvOptionsCFDEM
rm: cannot remove 'log/log_compile_results_fail': No such file or directory

This routine will compile the solvers specified in solver-list.txt

Please provide the solvers to be compiled in the /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/solver-list.txt file.
structure:
path to provide the path relative to CFDEM_SOLVER_DIR

example:
cfdemSolverPiso/dir

running compilation in pseudo-parallel mode of 4 solvers
do compilation in serial
waiting...
compiling cfdemSolverPiso

// log_compileCFDEMcoupling_cfdemSolverPiso_cfdemSolverPiso-2017-04-10-14:33 //

/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverPiso

removing all .dep files ...
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
wmake error: file 'Make/linux64GccDPInt32Opt/sourceFiles' could not be created in /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverPiso
waiting...
compiling cfdemSolverIB

// log_compileCFDEMcoupling_cfdemSolverIB_cfdemSolverIB-2017-04-10-14:33 //

/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverIB

removing all .dep files ...
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
wmake error: file 'Make/linux64GccDPInt32Opt/sourceFiles' could not be created in /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverIB
waiting...
compiling cfdemSolverPisoScalar

// log_compileCFDEMcoupling_cfdemSolverPisoScalar_cfdemSolverPisoScalar-2017-04-10-14:33 //

/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverPisoScalar

removing all .dep files ...
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
wmake error: file 'Make/linux64GccDPInt32Opt/sourceFiles' could not be created in /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverPisoScalar
waiting...
compiling cfdemSolverPisoSTM

// log_compileCFDEMcoupling_cfdemSolverPisoSTM_cfdemSolverPisoSTM-2017-04-10-14:33 //

/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverPisoSTM

removing all .dep files ...
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
wmake error: file 'Make/linux64GccDPInt32Opt/sourceFiles' could not be created in /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverPisoSTM
waiting...
compilation done.
waiting...
collecting log of /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverPiso
collecting log of /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverIB
collecting log of /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverPisoScalar
collecting log of /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/solvers/cfdemSolverPisoSTM

This routine will compile the utilities specified in utilities-list.txt

Please provide the utilities to be compiled in the /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/utilities-list.txt file.
structure:
path to provide the path relative to CFDEM_UT_DIR

example:
cfdemPostproc/dir

running compilation in pseudo-parallel mode of 1 utilities
do compilation in serial
waiting...
compiling cfdemPostproc

// log_compileCFDEMcoupling_cfdemPostproc_cfdemPostproc-2017-04-10-14:33 //

/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/utilities/cfdemPostproc

removing all .dep files ...
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
ls: cannot access '/usr/include/vtk*': No such file or directory
grep: /lost+found: Permission denied
grep: /root: Permission denied
grep: /vmlinuz: Permission denied
grep: /vmlinuz.old: Permission denied
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_vtk:13: *** first argument to 'word' function must be greater than 0. Stop.
wmake error: file 'Make/linux64GccDPInt32Opt/sourceFiles' could not be created in /home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/applications/utilities/cfdemPostproc
waiting...
compilation done.
waiting...

j-kerbl's picture

j-kerbl | Mon, 04/10/2017 - 17:49

Hi Clyde,

looks as the search for VTK triggered by the additionalLibs is failing. You could either install it (e.g. with aptitude if available), or comment line 13 with '#' in
/home/lenovo/CFDEM/CFDEMcoupling-PUBLIC-3.0.0/src/lagrangian/cfdemParticle/etc/addLibs_universal/additionalLibs_3.0.x

Then the compilation should proceed.

Cheers,
Josef